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血液病医院

  • 姓 名:

    原佳沛

  • 单 位:

    中国医学科学院血液病医院(中国医学科学院血液学研究所)

  • 教职岗位:

    助理教授

  • 聘任时间:

    2023-01-01

  • 一级学科:

    生物学

  • 二级学科:

    生物信息学

  • 联系方式:

    yuanjiapei@ihcams.ac.cn

  • 导师风采链接:
    https://yzbss.pumc.edu.cn/basicinfo/tutorinfo/tutordetail/J2021140001

个人简介

原佳沛,研究员,博士研究生导师。2023年获聘中国医学科学院老虎机游戏准聘长聘系列助理教授。累计承担多项国家及老虎机游戏级科研课题。 老虎机游戏引进人才,2021年加入老虎机游戏, 曾在美国德克萨斯大学西南医学中心病理系从事博士后研究(2017年10月至2020年12月)。


主要研究内容

长期从事三维基因学与肿瘤精准诊疗的研究,通过整合肿瘤患者基因组学、三维基因组学和表观组学数据,围绕肿瘤患者的靶点开展了一系列系统性的研究,为肿瘤患者的靶点鉴定提出了新策略,有效提高了靶基因的鉴定效率和准确度,并对肿瘤患者的精准分型提出了新的理论依据。以第一作者/通讯作者在 Cancer Discovery、Nature Communications、Journal of Clinical Investigation、Genome Medicine 等杂志发表论文11篇,其他合作课题在 Nature Medicine、Cancer Discovery、Genome Biology 等杂志发表论文12篇,H指数12,累计引用次数超1400。


代表性成果

老虎机游戏

1. Jiapei Yuan#, *, Yang Tong#, Le Wang, Xiaoxiao Yang, Xiaochuan Liu, Meng Shu, Zekun Li, Wen Jin, Chenchen Guan, Yuting Wang, Qiang Zhang*, Yang Yang*. A compendium of genetic variations associated with promoter usage across 49 human tissues. Nature Communications. 2024 Oct 9;15(1):8758. (IF=15.7)

2. Jiapei Yuan#*, Jingliao Zhang#, Beibei Zhao, Fang Liu, Tianfeng Liu, Yongjuan Duan, Yumei Chen, Xiaojuan Chen, Yao Zou, Li Zhang, Ye Guo, Wenyu Yang, Yang Yang, Jun Wei*, Xiaofan Zhu*, Yingchi Zhang*. Single-cell transcriptomic analysis of the immune microenvironment in pediatric acute leukemia. Cancer Letters. 2024 Jun 4:217018. (IF=10.1)

3. Xiaochuan Liu#, Hao Chen#, Zekun Li, Xiaoxiao Yang, Wen Jin, Yuting Wang, Jian Zheng, Long Li, Chenghao Xuan, Jiapei Yuan*, Yang Yang*. InPACT: a computational method for accurate characterization of intronic polyadenylation from RNA sequencing data. Nature Communications. 2024 Mar 22;15(1):2583. (IF=15.7)

4. Zekun Li#, Gerui Liu#, XiaoXiao Yang#, Meng Shu, Wen Jin, Yang Tong, Xiaochuan Liu, Yuting Wang, Jiapei Yuan*, Yang Yang*. An atlas of cell-type-specific interactome networks across 44 human tumor types. Genome Medicine, 2024 Feb 12;16(1):30. (IF=11.2).

5. Jiapei Yuan#, Yang Tong#, Xiaochuan Liu, Mulin Jun Li, Qiang Zhang*, Yang Yang*. eaQTLdb: An atlas of enhancer activity quantitative trait loci across cancer types. International Journal of Cancer, 2023 Jul 1;153(1):111-119. (IF=5.7).

6. Jiapei Yuan, Kathleen E Houlahan, Susmita G Ramanand, Sora Lee, GuemHee Baek, Yang Yang, Yong Chen, Douglas W Strand, Michael Q Zhang, Paul C Boutros, Ram S Mani*. Prostate cancer transcriptomic regulation by the interplay of germline risk alleles, somatic mutations and 3D-genomic architecture. Cancer Discovery, 2022, Dec 2;12(12):2838-2855. (IF=29.1)

7. Susmita G Ramanand#, Yong Chen#, Jiapei Yuan#, Kelly Daescu, Maryou Bk Lambros, Kathleen E Houlahan, Suzanne Carreira, Wei Yuan, GuemHee Baek, Adam Sharp, Alec Paschalis, Mohammed Kanchwala, Yunpeng Gao, Adam Aslam, Nida Safdar, Xiaowei Zhan, Ganesh V Raj, Chao Xing, Paul C Boutros, Johann de Bono, Michael Q Zhang*, Ram S Mani*. The Landscape of RNA Polymerase II Associated Chromatin Interactions in Prostate Cancer. Journal of Clinical investigation, 2020 Aug 3;130(8):3987-4005. (IF=14.8)  

8. Jiapei Yuan#, Jingrui Li#, Yang Yang, Chang Tan, Yumin Zhu, Long Hu, Yijun Qi*, Zhi John Lu*. Stress-responsive regulation of long non-coding RNA polyadenylation in Oryza sativa. The Plant Journal, 2018 Mar;93(5):814-827. (IF=5.726).

9. Jiapei Yuan#, Ye Zhang#, Jinsong Dong, Yuzhe Sun, Boon L Lim, Dong Liu*, Zhi John Lu*. Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana. BMC Genomics, 2016 Aug 18;17:655.

10. Chao Di#, Jiapei Yuan#, Yue Wu, Jingrui Li, Huixin Lin, Long Hu, Ting Zhang, Yijun Qi, Mark B Gerstein, Yan Guo, Zhi John Lu*. Characterization of stress-responsive lncRNA in Arabidopsis Thaliana by integrating expression, epigenetic and structural features. The Plant Journal, 2014 Dec;80(5):848-61. (ESI highly cited paper, in the top 1% of the academic field of Plant & Animal Science). (IF= IF=5.726).