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  2. Haiyan Gong#, Yi Yang, Xiaotong Zhang*, Minghong Li, Sichen Zhang, Yang Chen*. CASPIAN: A Method to Identify Chromatin Topological Associated Domains based on Spatial Density Cluster. Computational and Structural Biotechnology Journal,2022,20:4816-4824. (IF=6.155)
  3. Ruiting Wang#, Fengling Chen, Qian Chen, Xin Wan, Minglei Shi, Antony K. Chen, Zhao Ma, Guohong Li, Min Wang, Yachen Ying, Qinyao Liu, Hu Li, Xu Zhang, Jinbiao Ma, Jiayun Zhong, Meihong Chen, Michael Q. Zhang*, Yong Zhang*, Yang Chen*, Dahai Zhu*. MyoD is a 3D genome structure organizer for muscle cell identity. Nature Communications,2022,13:205. (IF=16.6)
  4. Zhiyuan Yuan#, Qiming Zhou#, Lesi Cai#, Lin Pan, Weiliang Sun, Shiwei Qumu , Si Yu, Jiaxin Feng, Hansen Zhao, Yongchang Zheng, Minglei Shi, Shao Li, Yang Chen*,  Xinrong Zhang*, Michael Q. Zhang*. SEAM is a spatial single nuclear metabolomics method for dissecting tissue microenvironment. Nature Methods,2021,18(10):1223-1232. (IF=48)
  5. Shuai Jiang#, Hao Li, Hao Hong, Guifang Du, Xin Huang, Yu Sun, Junting Wang, Huan Tao, Kang Xu, Cheng Li, Yang Chen*, Hebing Chen*, Xiaochen Bo*. Spatial density of open chromatin: an effective metric for the functional characterization of topologically associated domains. Briefings in Bioinformatics,2021,22(3):bbaa210. (IF=13.994)
  6. Minglei Shi#, Kaiqiang You, Taoyu Chen, Chao Hou, Zhengyu Liang, Mingwei Liu, Jifeng Wang, Taotao Wei, Jun Qin, Yang Chen*, Michael Q Zhang*, Tingting Li*. Quantifying the phase separation property of chromatin-associated proteins under physiological conditions using an anti-1,6-hexanediol index.?Genome Biology,2021,22:229. (IF=17.906)
  7. Kaiqiang You#, Qi Huang,  Chunyu Yu,  Boyan Shen,  Cristoffer Sevilla, MingleiShi,  HenningHermjakob*,  Yang Chen*,  Tingting Li*. PhaSepDB: a database of liquid–liquid phase separation related proteins.?Nucleic Acids Research,2020,48(D1):D354-D359. (IF=10.727)
  8. Mohamed Nadhir Djekidel#, Yang Chen*, Michael Q. Zhang*. FIND: difFerential chromatin INteractions Detection using a spatial Poisson process, Genome Research, 2018, 28:1-11. (IF=11.22)
  9. Fengling Chen#, Guipeng Li, Michael Q Zhang, Yang Chen*. HiCDB: a sensitive and robust method for detecting contact domain boundaries. Nucleic Acids Research, 2018, 46, 11239-11250. (IF=14.9)
  10. Zhengyu Liang#, Guipeng Li, Zejun Wang, Mohamed Nadhir Djekidel, Yanjian Li, Min-Ping Qian, Michael Q. Zhang*, Yang Chen*. BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions, Nature Communications, 2017, 8:1622. (IF=16.6)